PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014236001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TCP
Protein Properties Length: 301aa    MW: 32904.7 Da    PI: 7.5709
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014236001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.85.6e-3642154289
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec.... 73 
                        +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++                       +    
  GSVIVT01014236001  42 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAQLpawhptaitvtaaaaaA------Ttatt 127
                        79**************************************************************88777777664433220......11111 PP

                TCP  74 eaesssssasnsssg.................k 89 
                        +++++ ++      +                  
  GSVIVT01014236001 128 THHQEDEE------NpnqvaidgdddrvqmhhG 154
                        11111111......0223344555544444321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-3142147IPR005333Transcription factor, TCP
PROSITE profilePS5136934.29544102IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAIISIINIL KPNISSSSRM GMRSVVGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR  60
RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKAAID ELAQLPAWHP TAITVTAAAA  120
AATTATTTHH QEDEENPNQV AIDGDDDRVQ MHHGNNPDPN PNPNPNQNPS FLPPSLDSDT  180
IADTIKSFFP MGASGESSSS SVQFQSYPPD LLSRTSSQNQ DLRLSLQSFQ DPMLLHHHHT  240
QSHSHHQQQA LFSPLGFDAP SAAWSEHHAA EMGRHCFAKA RCILRGDPFS PATRLRFALG  300
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.102530.0inflorescence| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4688630.0AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634670.20.0PREDICTED: transcription factor TCP4
SwissprotQ8LPR51e-79TCP4_ARATH; Transcription factor TCP4
TrEMBLF6H1Y20.0F6H1Y2_VITVI; Putative uncharacterized protein
STRINGVIT_19s0014g01680.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.18e-50TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3